Publications:
46. Ying Li*, Jie Xuan, Rui Hu, Pengchao Zhang, Xiaohua Lou, Yunhuang Yang*. (2019) Microfluidic triple-gradient generator for efficient screening of chemical space. Talanta, DOI: https://doi.org/10.1016/j.talanta.2019.06.018. (*Corresponding author) (IF=4.2)
45. Rui Hu, Chao Liu, Jie Xuan, Youzhi Xu, Tao Li, Bi-Feng Liu, Ying Li*, Yunhuang Yang. (2019) 3D Hydrodynamic Flow Focusing-based Micromixer Enables High-Resolution Imaging for Studying the Early Folding Kinetics of G-Quadruplex, Sensors and Actuators B: Chemical, 293, 312-320. (* Corresponding author) (IF=5.7)
44. Zhu, W., Li, Y., Liu, M., Zhu, J., and Yang, Y. (2019) Uncorrelated Effect of Interdomain Contact on Pin1 Isomerase Activity Reveals Positive Catalytic Cooperativity, J Phys Chem Lett，10:1272-1278，doi: 10.1021/acs.jpclett.9b00052.
43. Li, S., Hu, R., Yao, H., Long, D., Luo, F., Zhou, X., Zhang, X., Liu, M., Zhu, J., and Yang, Y. (2018) Characterization of the interaction interface and conformational dynamics of human TGIF1 homeodomain upon the binding of consensus DNA, Biochim Biophys Acta Proteins Proteom 1866, 1021-1028.
42. Zhu, J., Li, S., Ramelot, T. A., Kennedy, M. A., Liu, M., and Yang, Y. (2018) Structural insights into the impact of two holoprosencephaly-related mutations on human TGIF1 homeodomain, Biochem Biophys Res Commun 496, 575-581.
41. Wang, Z., Nie, Y., Zhang, K., Xu, H., Ramelot, T. A., Kennedy, M. A., Liu, M., Zhu, J., and Yang, Y. (2018) Solution structure of SHIP2 SH2 domain and its interaction with a phosphotyrosine peptide from c-MET, Arch Biochem Biophys 656, 31-37.
40. He, T., Zhu, J., Nie, Y., Hu, R., Wang, T., Li, P., Zhang, Q., and Yang, Y. (2018) Nanobody Technology for Mycotoxin Detection in the Field of Food Safety: Current Status and Prospects, Toxins 10 doi: 10.3390/toxins10050180.
39. Hu, R., He, T., Zhang, Z., Yang, Y., and Liu, M. (2018) Safety analysis of edible oil products via Raman spectroscopy, Talanta 191, 324-332.
38. Liang, C., Zhu, J., Ramelot, T. A., Kennedy, M. A., Yue, X., Li, X., Liu, M., He, T., and Yang, Y. (2018) Solution NMR structure of CHU_1110 from Cytophaga hutchinsonii, an AHSA1 protein potentially involved in metal ion stress response, Proteins 87, 91-95.
37. Nie, Y., Li, S., Zhu, J., Hu, R., Liu, M., He, T., and Yang, Y. (2018) Chemical shift assignments of a camelid nanobody against aflatoxin B1, Biomol NMR Assign doi: 10.1007/s12104-018-9855-y.
36. Li, T., Li, S., Liang, C., Zhu, J., Liu, M., and Yang, Y. (2018) Chemical shift assignments of RHE_RS02845, a NTF2-like domain-containing protein from Rhizobium etli, Biomol NMR Assign 12(2): 249-252.
35. Zhang, B., Guo, Q., Luo, Q., Zhang, X., Zeng, Q., Zhao, L., Yuan, Y., Jiang, W., Yang, Y., Liu, M., Ye, C., and Zhou, X. (2018) An intracellular diamine oxidase triggered hyperpolarized (129)Xe magnetic resonance biosensor, Chem Commun (Camb) 54(97): 13654-13657.
34. Liang, C., He, T., Li, T., Yang, Y., Zhu, J., and Liu, M. (2018) Chemical shift assignments of CHU_1110: an AHSA1-like protein from Cytophaga hutchinsonii, Biomol NMR Assign 12, 155-158.
33. Zhu, J., Wang, H., Ramelot, T. A., Kennedy, M. A., Hu, R., Yue, X., Liu, M., and Yang, Y. (2017) Solution NMR structure of zinc finger 4 and 5 from human INSM1, an essential regulator of neuroendocrine differentiation, Proteins 85, 957-962.
32. Liang, C., Zhu, J., Hu, R., Ramelot, T. A., Kennedy, M. A., Liu, M., and Yang, Y. (2017) Solution NMR structure of RHE_CH02687 from Rhizobium etli: A novel flavonoid-binding protein, Proteins 85, 951-956.
31. Liang, C., Hu, R., Ramelot, T. A., Kennedy, M. A., Li, X., Yang, Y., Zhu, J., and Liu, M. (2017) Chemical shift assignments of polyketide cyclase_like protein CGL2373 from Corynebacterium glutamicum, Biomol NMR Assign 11(2): 289-292.
30. He, T., Li, S., Hu, R., Ramelot, T. A., Kennedy, M. A., Yang, Y., Zhu, J., and Liu, M. (2017) Chemical shift assignments of Mb1858 (24-155), a FHA domain-containing protein from Mycobacterium bovis, Biomol NMR Assign 12(1): 1-4.
29. 李双利，朱勤俊，刘买利，杨运煌。（2017）蛋白质分子核磁共振谱峰的特性及其化学位移归属，波谱学杂志，137~147。
28. 王华谱，朱勤俊，刘买利，杨运煌，岳霞丽。（2017）蛋白质INSM1中的锌指结构域ZF(4-5)的表达、纯化与表征，波谱学杂志，1~7。
27. 聂瑶，李双利，李涛，朱江，胡锐，蒋滨，张许，杨运煌，刘买利。（2017）溶液中蛋白质寡聚态的表征分析，中国科学:化学，1450~1457。
26. 蒋滨，何晓敏，杨运煌，张许，周欣，李从刚，杨代文，刘买利。（2017）利用迭代软阈值方法抑制恒时演化类核磁共振实验中的采样截断伪峰，分析化学，1888~1894。
25. Li, S., Ramelot, T. A., Kennedy, M. A., Liu, M., and Yang, Y. (2016) Chemical shift assignments of the homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, Biomol NMR Assign 10, 341-344.
24. Li, B., Wang, X. D., Guo, Y. L., Iqbal, A., Dong, Y. P., Li, W., Liu, W. S., Qin, W. W., Chen, S. Z., Zhou, X., and Yang, Y. (2016) One-pot synthesis of polyamines improved magnetism and fluorescence Fe3O4-carbon dots hybrid NPs for dual modal imaging, Dalton T 45, 5484-5491.
23. Everett, J. K., Tejero, R., Murthy, S. B., Acton, T. B., Aramini, J. M., Baran, M. C., Benach, J., Cort, J. R., Eletsky, A., Forouhar, F., Guan, R., Kuzin, A. P., Lee, H. W., Liu, G., Mani, R., Mao, B., Mills, J. L., Montelione, A. F., Pederson, K., Powers, R., Ramelot, T., Rossi, P., Seetharaman, J., Snyder, D., Swapna, G. V., Vorobiev, S. M., Wu, Y., Xiao, R., Yang, Y., Arrowsmith, C. H., Hunt, J. F., Kennedy, M. A., Prestegard, J. H., Szyperski, T., Tong, L., and Montelione, G. T. (2016) A community resource of experimental data for NMR / X-ray crystal structure pairs, Protein science : a publication of the Protein Society 25, 30-45.
Before 2015:
22. Yang, Y., Ramelot, T. A., Ni, S., McCarrick, R. M., and Kennedy, M. A. (2014) Applications of NMR-based PRE and EPR-based DEER spectroscopy to homodimer chain exchange characterization and structure determination, Methods Mol Biol 1091, 215-227.
21. Yang, Y., Ramelot, T. A., Lee, H. W., Xiao, R., Everett, J. K., Montelione, G. T., Prestegard, J. H., and Kennedy, M. A. (2014) Solution structure of the free Zalpha domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain, J Biomol NMR 60, 189-195.
20. Yang, Y., Ramelot, T. A., Lee, H. W., Xiao, R., Everett, J. K., Montelione, G. T., Prestegard, J. H., and Kennedy, M. A. (2014) Solution structure of a C-terminal fragment (175-257) of CV_0373 protein from Chromobacterium violaceum adopts a winged helix-turn-helix (wHTH) fold, J Biomol NMR 60, 197-202.
19. Elshahawi, S. I., Ramelot, T. A., Seetharaman, J., Chen, J., Singh, S., Yang, Y., Pederson, K., Kharel, M. K., Xiao, R., Lew, S., Yennamalli, R. M., Miller, M. D., Wang, F., Tong, L., Montelione, G. T., Kennedy, M. A., Bingman, C. A., Zhu, H., Phillips, G. N., Jr., and Thorson, J. S. (2014) Structure-guided functional characterization of enediyne self-sacrifice resistance proteins, CalU16 and CalU19, ACS chemical biology 9, 2347-2358.
18. Ramelot, T. A., Yang, Y., Sahu, I. D., Lee, H. W., Xiao, R., Lorigan, G. A., Montelione, G. T., and Kennedy, M. A. (2013) NMR structure and MD simulations of the AAA protease intermembrane space domain indicates peripheral membrane localization within the hexaoligomer, FEBS Lett 587, 3522-3528.
17. Yang, Y., Ramelot, T. A., Ni, S., McCarrick, R. M., and Kennedy, M. A. (2012) Measurement of rate constants for homodimer subunit exchange using double electron-electron resonance and paramagnetic relaxation enhancements, J Biomol NMR 55(1): 47-58.
16. Yang, Y., Ramelot, T. A., Cort, J. R., Garcia, M., Yee, A., Arrowsmith, C. H., and Kennedy, M. A. (2012) Solution NMR Structure of Hypothetical Protein CV_2116 Encoded by a Viral Prophage Element in Chromobacterium violaceum, International Journal of Molecular Sciences 13, 7354-7364.
15. Rosato, A., Aramini, J. M., Arrowsmith, C., Bagaria, A., Baker, D., Cavalli, A., Doreleijers, J. F., Eletsky, A., Giachetti, A., Guerry, P., Gutmanas, A., Guntert, P., He, Y., Herrmann, T., Huang, Y. J., Jaravine, V., Jonker, H. R., Kennedy, M. A., Lange, O. F., Liu, G., Malliavin, T. E., Mani, R., Mao, B., Montelione, G. T., Nilges, M., Rossi, P., van der Schot, G., Schwalbe, H., Szyperski, T. A., Vendruscolo, M., Vernon, R., Vranken, W. F., de Vries, S., Vuister, G. W., Wu, B., Yang, Y., and Bonvin, A. M. (2012) Blind testing of routine, fully automated determination of protein structures from NMR data, Structure 20, 227-236.
14. Ramelot, T. A., Rossi, P., Forouhar, F., Lee, H. W., Yang, Y., Ni, S., Unser, S., Lew, S., Seetharaman, J., Xiao, R., Acton, T. B., Everett, J. K., Prestegard, J. H., Hunt, J. F., Montelione, G. T., and Kennedy, M. A. (2012) Structure of a specialized acyl carrier protein essential for lipid A biosynthesis with very long-chain fatty acids in open and closed conformations, Biochemistry 51, 7239-7249.
13. Yang, Y., Ramelot, T. A., Cort, J. R., Wang, H., Ciccosanti, C., Jiang, M., Janjua, H., Acton, T. B., Xiao, R., Everett, J. K., Montelione, G. T., and Kennedy, M. A. (2011) Solution NMR structure of Dsy0195 homodimer from Desulfitobacterium hafniense: first structure representative of the YabP domain family of proteins involved in spore coat assembly, J Struct Funct Genomics 12, 175-179.
12. Yang, Y., Ramelot, T. A., Cort, J. R., Wang, D., Ciccosanti, C., Hamilton, K., Nair, R., Rost, B., Acton, T. B., Xiao, R., Everett, J. K., Montelione, G. T., and Kennedy, M. A. (2011) Solution NMR structure of photosystem II reaction center protein Psb28 from Synechocystis sp. Strain PCC 6803, Proteins 79, 340-344.
11. Ramelot, T. A., Yang, Y., Xiao, R., Acton, T. B., Everett, J. K., Montelione, G. T., and Kennedy, M. A. (2011) Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron, Proteins 80(2): 667-670.
10. Feldmann, E. A., Ramelot, T. A., Yang, Y., Xiao, R., Acton, T. B., Everett, J. K., Montelione, G. T., and Kennedy, M. A. (2011) Solution NMR structure of Asl3597 from Nostoc sp. PCC7120, the first structure from protein domain family PF12095, reveals a novel fold, Proteins 80(2): 671-675.
9. Yang, Y., Ramelot, T. A., McCarrick, R. M., Ni, S., Feldmann, E. A., Cort, J. R., Wang, H., Ciccosanti, C., Jiang, M., Janjua, H., Acton, T. B., Xiao, R., Everett, J. K., Montelione, G. T., and Kennedy, M. A. (2010) Combining NMR and EPR methods for homodimer protein structure determination, J Am Chem Soc 132, 11910-11913.
8. Sivashanmugam, A., Yang, Y., Murray, V., McCullough, C., Chen, B., Ren, X., Li, Q., and Wang, J. (2008) Structural basis of human high-density lipoprotein formation and assembly at sub nanometer resolution, Methods Cell Biol 90, 327-364.
7. Yang, Y., Hoyt, D., and Wang, J. (2007) A complete NMR spectral assignment of the lipid-free mouse apolipoprotein A-I (apoAI) C-terminal truncation mutant, apoAI(1-216), Biomol NMR Assign 1, 109-111.
6. Ren, X., Yang, Y., Neville, T., Hoyt, D., Sparks, D., and Wang, J. (2007) A complete backbone spectral assignment of human apolipoprotein AI on a 38 kDa prebetaHDL (Lp1-AI) particle, Biomol NMR Assign 1, 69-71.
5. Ren, X. A., Sivashanmugam; Chen B., Li C.; Yang Y., Neville T., Hoyt D., Jerome W., Sparks D, Li Q., and Wang J. (2006) NMR structural studies of human apolipoprotein A-I at the lipid-free and HDL-associated states: A progress report, Functional and Structural Biology on the Lipo-network, 65-93.
4. Bai, G., Cui, Y., Yang, Y., Ye, C., and Liu, M. (2005) A competitive low-affinity binding model for determining the mutual and specific sites of two ligands on protein, J Pharm Biomed Anal 38, 588-593.
3. Yang, Y., Bai, G., Zhang, X., Ye, C., and Liu, M. (2004) 1H NMR spectroscopic evidence of interaction between ibuprofen and lipoproteins in human blood plasma, Anal Biochem 324, 292-297.
2. Wang, X., Hu, Z., Fang, Z., Feng, Y., Yang, Y., Wang, Q., Tang, X., Wu, Y., and Wang, J. (2004) Correlation of Alzheimer-like Tau Hyperphosphorylation and fMRI Bold Intensity, Curr Alzheimer Res, 143-148.
1. Yan, G., Zhuo, R., Yang, Y., Li, L., Liu, M., and Ye, C. (2002) Tumor-selective macromolecular MRI contrast agents, J Bioact Compat Pol 17, 139-151.
